STRINGSTRING
Solyc08g065830.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc08g065830.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc08g065830.2.1Uncharacterized protein (271 aa)    
Predicted Functional Partners:
Solyc12g056540.1.1
Histone H3 (136 aa)
       
    0.512
Solyc11g010230.1.1
Histone H3 (136 aa)
       
    0.512
Solyc10g008910.1.1
Histone H3 (136 aa)
       
    0.512
Solyc09g059280.1.1
Uncharacterized protein (54 aa)
       
    0.512
Solyc05g051500.2.1
Histone H3 (136 aa)
       
    0.512
LOC544102
Histone H3 (136 aa)
       
    0.512
Solyc04g074580.1.1
Histone H3 (136 aa)
       
    0.512
Solyc04g049470.2.1
Uncharacterized protein (83 aa)
       
    0.512
Solyc02g077480.1.1
Annotation not available (136 aa)
       
    0.512
Solyc01g095650.2.1
Uncharacterized protein (144 aa)
       
    0.512
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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