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STRINGSTRING
Solyc08g067200.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc08g067200.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc08g067200.1.1annotation not available (291 aa)    
Predicted Functional Partners:
101250389
RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs) (1119 aa)
     
 
  0.827
AGO6
AGO6; Argonaute family protein; Belongs to the argonaute family (903 aa)
     
 
  0.814
101264590
annotation not available (936 aa)
       
 
  0.811
DCL
Protein DCL, chloroplastic; Has a function in the early stage of chloroplast development and palisade cell morphogenesis. Required for correct plastid ribosome assembly. Required for processing and maturation of 4.5S rRNA (224 aa)
           
  0.763
Solyc01g109970.2.1
annotation not available (907 aa)
       
 
  0.740
101248430
annotation not available (519 aa)
     
 
  0.722
Solyc11g021130.1.1
annotation not available (285 aa)
   
 
  0.716
Solyc04g049260.1.1
annotation not available (166 aa)
   
 
  0.716
Solyc01g056620.2.1
double-stranded-RNA-binding protein 4 (288 aa)
       
 
  0.711
101252107
C2H2 zinc-finger protein SERRATE (SE) (748 aa)
     
 
  0.705
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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