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STRINGSTRING
Solyc08g068040.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc08g068040.2.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc08g068040.2.1annotation not available (648 aa)    
Predicted Functional Partners:
Solyc10g006410.2.1
Unknown protein; Has 266 Blast hits to 264 proteins in 44 species- Archae - 0; Bacteria - 0; Metazoa - 58; Fungi - 0; Plants - 199; Viruses - 0; Other Eukaryotes - 9 (source- NCBI BLink) (568 aa)
     
   
  0.631
Solyc08g077500.2.1
annotation not available (3731 aa)
     
        0.618
Solyc08g077490.1.1
annotation not available (657 aa)
     
        0.618
101264269
Unknown protein; Has 84 Blast hits to 64 proteins in 35 species- Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 29 (source- NCBI BLink) (1130 aa)
     
   
  0.582
Solyc04g051570.2.1
annotation not available (1517 aa)
     
   
  0.574
Solyc04g051560.1.1
annotation not available (446 aa)
     
   
  0.574
Solyc04g051550.1.1
annotation not available (1253 aa)
     
   
  0.574
Solyc08g068030.1.1
annotation not available (146 aa)
 
            0.561
Solyc08g068010.1.1
annotation not available (1163 aa)
 
            0.556
101267189
Uncharacterized protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 25 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Protein of unknown function /.../83, C-terminal (InterPro-IPR012880), Foie gras liver health family 1 (InterPro-IPR021773); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (1176 aa)
           
  0.556
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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