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STRINGSTRING
Solyc08g068820.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc08g068820.2.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc08g068820.2.1annotation not available (147 aa)    
Predicted Functional Partners:
Solyc06g036580.2.1
annotation not available (633 aa)
       
      0.766
101255099
annotation not available (549 aa)
       
      0.766
Solyc05g054870.2.1
annotation not available (252 aa)
       
      0.766
101266454
annotation not available (172 aa)
           
  0.675
Solyc08g068830.2.1
annotation not available (346 aa)
 
            0.573
101255123
Protein kinase superfamily protein (1016 aa)
           
  0.567
Solyc10g074630.1.1
GTP-binding protein 1; Belongs to the small GTPase superfamily. Arf family (193 aa)
     
   
  0.559
101253196
annotation not available (527 aa)
           
  0.556
Solyc03g114330.2.1
annotation not available (399 aa)
           
  0.556
101249370
Uncharacterized protein; INVOLVED IN- positive regulation of catalytic activity, protein processing; LOCATED IN- integral to membrane; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Aph-1 (InterPro-IPR009294); Has 268 Blas /.../ to 262 proteins in 79 species- Archae - 0; Bacteria - 0; Metazoa - 212; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 22 (source- NCBI BLink) (253 aa)
           
  0.529
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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