STRINGSTRING
Solyc08g069110.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc08g069110.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc08g069110.2.1Uncharacterized protein (651 aa)    
Predicted Functional Partners:
Solyc01g094190.2.1
Uncharacterized protein (324 aa)
 
 
  0.793
SQD1
UDP-sulfoquinovose synthase (480 aa)
   
   
  0.645
Solyc04g082750.2.1
Uncharacterized protein (478 aa)
 
   
  0.631
Solyc09g011220.2.1
Uncharacterized protein (361 aa)
   
 
  0.590
Solyc06g051270.2.1
Uncharacterized protein (361 aa)
   
 
  0.590
GMP
GDP-mannose pyrophosphorylase (361 aa)
   
 
  0.590
Solyc11g072090.1.1
Uncharacterized protein (461 aa)
   
 
  0.570
Solyc03g113790.2.1
Uncharacterized protein (415 aa)
   
 
  0.570
Solyc01g098180.2.1
Uncharacterized protein (732 aa)
   
 
  0.570
GME2
GDP-mannose 3’,5’-epimerase (376 aa)
 
 
0.568
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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