STRINGSTRING
Solyc08g075100.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc08g075100.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc08g075100.2.1Uncharacterized protein (356 aa)    
Predicted Functional Partners:
Solyc02g005200.2.1
Uncharacterized protein (365 aa)
   
        0.525
VKOR
Vitamin K epoxide reductase (373 aa)
   
          0.518
Solyc04g005090.2.1
Uncharacterized protein (280 aa)
   
          0.507
Solyc06g073290.1.1
Uncharacterized protein (263 aa)
   
          0.500
Solyc07g054820.2.1
Uncharacterized protein (250 aa)
   
          0.492
Solyc12g096100.1.1
Uncharacterized protein (193 aa)
   
          0.491
Solyc08g015620.2.1
Uncharacterized protein (276 aa)
   
        0.469
Solyc05g006440.2.1
Uncharacterized protein (197 aa)
   
          0.469
Solyc12g098710.1.1
Uncharacterized protein (369 aa)
   
          0.463
Solyc03g098110.2.1
Uncharacterized protein (385 aa)
   
          0.454
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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