STRINGSTRING
Solyc08g075580.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc08g075580.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc08g075580.1.1Uncharacterized protein (153 aa)    
Predicted Functional Partners:
Solyc07g006250.2.1
Uncharacterized protein (102 aa)
     
  0.993
Solyc09g010500.2.1
Uncharacterized protein (144 aa)
     
  0.993
Solyc05g055890.2.1
DNA-directed RNA polymerase subunit ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (111 aa)
     
  0.992
Solyc12g015780.1.1
Uncharacterized protein (393 aa)
     
  0.992
Solyc11g007810.1.1
Uncharacterized protein (168 aa)
     
  0.992
Solyc12g035870.1.1
Uncharacterized protein (398 aa)
     
  0.989
Solyc06g036000.2.1
Uncharacterized protein (390 aa)
     
  0.988
Solyc06g035990.2.1
Uncharacterized protein (148 aa)
     
  0.988
Solyc11g072730.1.1
DNA-directed RNA polymerase subunit ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1390 aa)
     
  0.987
Solyc06g083360.2.1
Uncharacterized protein (71 aa)
     
  0.987
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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