STRINGSTRING
Solyc08g075840.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc08g075840.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc08g075840.2.1Uncharacterized protein (899 aa)    
Predicted Functional Partners:
Solyc07g005020.2.1
DNA helicase (737 aa)
     
  0.993
Solyc07g005880.2.1
Uncharacterized protein (1012 aa)
     
  0.983
RPA32b
RPA32b (280 aa)
     
  0.981
RPA32a
RPA32a (272 aa)
     
  0.981
MSH2
Mismatch repair protein ; Component of the post-replicative DNA mismatch repair system (MMR) (943 aa)
     
  0.977
Solyc01g079500.2.1
DNA helicase (718 aa)
     
  0.977
Solyc11g040120.1.1
DNA helicase (860 aa)
     
  0.976
Solyc01g105530.2.1
Uncharacterized protein (75 aa)
     
  0.976
Solyc01g105520.2.1
Uncharacterized protein (600 aa)
     
  0.976
Solyc09g007330.2.1
Uncharacterized protein (795 aa)
     
  0.973
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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