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STRINGSTRING
101259183 protein (Solanum lycopersicum) - STRING interaction network
"101259183" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
101259183Uncharacterized protein; Suppressor of abi3-5 (1010 aa)    
Predicted Functional Partners:
101263245
annotation not available (723 aa)
     
 
  0.957
101263271
D111/G-patch domain-containing protein (393 aa)
     
 
  0.904
101246077
D111/G-patch domain-containing protein (357 aa)
       
 
  0.887
101249838
DEA(D/H)-box RNA helicase family protein (754 aa)
     
 
  0.846
101260390
CONTAINS InterPro DOMAIN/s- Nrap protein (InterPro-IPR005554); Has 396 Blast hits to 382 proteins in 182 species- Archae - 3; Bacteria - 2; Metazoa - 142; Fungi - 146; Plants - 43; Viruses - 0; Other Eukaryotes - 60 (source- NCBI BLink) (1051 aa)
     
 
  0.839
Solyc07g056550.2.1
Uncharacterized protein; CONTAINS InterPro DOMAIN/s- Bystin (InterPro-IPR007955); Has 475 Blast hits to 467 proteins in 210 species- Archae - 0; Bacteria - 9; Metazoa - 155; Fungi - 139; Plants - 55; Viruses - 0; Other Eukaryotes - 117 (source- NCBI BLink) (398 aa)
       
 
  0.830
101266099
annotation not available (607 aa)
     
 
  0.827
101268341
annotation not available (154 aa)
     
 
  0.827
101257911
Uncharacterized protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- RNA processing; LOCATED IN- intracellular; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- RNA-processing protein, HAT helix (InterPro-IPR00310 /.../ small nucleolar RNA-associated protein 6 (InterPro-IPR013949); Has 492 Blast hits to 480 proteins in 206 species- Archae - 0; Bacteria - 2; Metazoa - 128; Fungi - 191; Plants - 60; Viruses - 0; Other Eukaryotes - 111 (source- NCBI BLink) (652 aa)
     
 
  0.808
101263485
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA (560 aa)
     
 
0.775
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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