Solyc08g077310.2.1 protein (Solanum lycopersicum)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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proteins of unknown 3D structure

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some 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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textmining

co-expression

protein homology

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[Homology]

Score

Solyc08g077310.2.1

Uncharacterized protein (1010 aa)

Predicted Functional Partners:

Solyc12g008750.1.1

0.953

Solyc02g085570.2.1

0.953

Solyc02g062920.2.1

0.953

Solyc09g090420.2.1

0.951

Solyc09g008470.2.1

0.795

Solyc01g079250.2.1

0.716

Solyc03g025280.2.1

0.661

Solyc06g071140.2.1

0.648

Solyc11g005110.1.1

0.647

Solyc02g069790.2.1

0.640

Your Current Organism:

Solanum lycopersicum

NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Solyc01g079250.2.1	Solyc02g062920.2.1	Uncharacterized protein	Uncharacterized protein	0.665
Solyc01g079250.2.1	Solyc02g069790.2.1	Uncharacterized protein	Uncharacterized protein	0.613
Solyc01g079250.2.1	Solyc02g085570.2.1	Uncharacterized protein	BAC19.11	0.665
Solyc01g079250.2.1	Solyc03g025280.2.1	Uncharacterized protein	Uncharacterized protein	0.546
Solyc01g079250.2.1	Solyc08g077310.2.1	Uncharacterized protein	Uncharacterized protein	0.716
Solyc01g079250.2.1	Solyc09g008470.2.1	Uncharacterized protein	Uncharacterized protein	0.869
Solyc01g079250.2.1	Solyc09g090420.2.1	Uncharacterized protein	Uncharacterized protein	0.665
Solyc01g079250.2.1	Solyc11g005110.1.1	Uncharacterized protein	Uncharacterized protein	0.840
Solyc01g079250.2.1	Solyc12g008750.1.1	Uncharacterized protein	Uncharacterized protein	0.665
Solyc02g062920.2.1	Solyc01g079250.2.1	Uncharacterized protein	Uncharacterized protein	0.665
Solyc02g062920.2.1	Solyc02g069790.2.1	Uncharacterized protein	Uncharacterized protein	0.541
Solyc02g062920.2.1	Solyc02g085570.2.1	Uncharacterized protein	BAC19.11	0.800
Solyc02g062920.2.1	Solyc03g025280.2.1	Uncharacterized protein	Uncharacterized protein	0.523
Solyc02g062920.2.1	Solyc08g077310.2.1	Uncharacterized protein	Uncharacterized protein	0.953
Solyc02g062920.2.1	Solyc09g008470.2.1	Uncharacterized protein	Uncharacterized protein	0.944
Solyc02g062920.2.1	Solyc09g090420.2.1	Uncharacterized protein	Uncharacterized protein	0.800
Solyc02g062920.2.1	Solyc11g005110.1.1	Uncharacterized protein	Uncharacterized protein	0.858
Solyc02g062920.2.1	Solyc12g008750.1.1	Uncharacterized protein	Uncharacterized protein	0.800
Solyc02g069790.2.1	Solyc01g079250.2.1	Uncharacterized protein	Uncharacterized protein	0.613
Solyc02g069790.2.1	Solyc02g062920.2.1	Uncharacterized protein	Uncharacterized protein	0.541

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