STRINGSTRING
Solyc08g077420.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc08g077420.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc08g077420.2.1Uncharacterized protein (1274 aa)    
Predicted Functional Partners:
Solyc04g049770.2.1
Uncharacterized protein (423 aa)
     
  0.995
Solyc10g044450.1.1
Uncharacterized protein (481 aa)
     
  0.994
Solyc01g103420.2.1
Uncharacterized protein (496 aa)
     
  0.994
UPF2
Regulator of nonsense transcripts UPF2 (769 aa)
     
  0.981
Solyc10g080740.1.1
Uncharacterized protein (967 aa)
     
  0.974
Solyc12g019960.1.1
Uncharacterized protein (597 aa)
     
  0.973
Solyc06g069020.2.1
Uncharacterized protein (534 aa)
     
  0.887
Solyc03g118990.1.1
Uncharacterized protein (70 aa)
     
  0.887
Solyc03g118980.2.1
Uncharacterized protein (162 aa)
     
  0.887
Solyc07g039550.2.1
Uncharacterized protein (1190 aa)
     
  0.826
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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