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STRINGSTRING
Solyc08g077610.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc08g077610.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc08g077610.1.1annotation not available (669 aa)    
Predicted Functional Partners:
Solyc02g091120.2.1
DNA LIGASE 6 (1473 aa)
     
 
  0.606
101264663
DNA repair and meiosis protein (Mre11); Belongs to the MRE11/RAD32 family (731 aa)
   
 
  0.568
101249807
HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (285 aa)
     
 
  0.565
101251156
annotation not available (316 aa)
     
 
  0.565
101265586
HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (462 aa)
     
 
  0.565
pcna
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (264 aa)
   
 
  0.561
101256634
Uncharacterized protein; Ataxia telangiectasia-mutated and RAD3-related (2728 aa)
     
 
  0.537
Solyc11g073220.1.1
Uncharacterized protein; Homolog of RAD51 D (311 aa)
     
 
  0.535
101253055
DNA repair (Rad51) family protein (371 aa)
     
 
  0.535
101263651
Putative recA protein ; Belongs to the RecA family (395 aa)
     
 
  0.535
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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