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Solyc08g077890.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc08g077890.2.1" - ATP-dependent Clp protease proteolytic subunit in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc08g077890.2.1ATP-dependent Clp protease proteolytic subunit (302 aa)    
Predicted Functional Partners:
Solyc03g083250.2.1
Uncharacterized protein (570 aa)
 
 
  0.927
Solyc06g063410.2.1
Uncharacterized protein (687 aa)
 
 
  0.926
Solyc01g102990.2.1
Uncharacterized protein (636 aa)
 
 
  0.926
Solyc01g107680.2.1
Uncharacterized protein (71 aa)
 
 
  0.914
Solyc03g007110.2.1
Uncharacterized protein (235 aa)
   
 
  0.793
CD4B
ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic ; May interact with a ClpP-like protease involved in degradation of denatured proteins in the chloroplast (923 aa)
   
 
  0.786
Solyc11g006650.1.1
Uncharacterized protein (844 aa)
   
 
  0.786
Solyc10g082000.1.1
Uncharacterized protein (724 aa)
   
 
  0.786
Solyc09g055230.2.1
Uncharacterized protein (1075 aa)
   
 
  0.786
Solyc07g018070.2.1
Uncharacterized protein (1022 aa)
   
 
  0.786
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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