STRINGSTRING
Solyc08g078000.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc08g078000.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc08g078000.2.1Uncharacterized protein (220 aa)    
Predicted Functional Partners:
Solyc03g083440.2.1
Uncharacterized protein (2226 aa)
       
      0.898
Solyc12g010510.1.1
Uncharacterized protein (656 aa)
       
  0.874
Solyc11g013190.1.1
Uncharacterized protein (811 aa)
       
  0.874
Solyc10g084800.1.1
Uncharacterized protein (458 aa)
       
  0.874
Solyc08g078970.1.1
Uncharacterized protein (201 aa)
       
  0.874
Solyc08g078960.2.1
Uncharacterized protein (517 aa)
       
  0.874
Solyc07g006100.2.1
Uncharacterized protein (781 aa)
       
  0.874
Solyc05g013960.2.1
Uncharacterized protein (801 aa)
       
  0.874
Solyc05g018300.2.1
Uncharacterized protein (1080 aa)
     
  0.706
Solyc08g082700.2.1
Uncharacterized protein (267 aa)
     
      0.612
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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