Solyc08g078220.2.1 protein (Solanum lycopersicum)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

Solyc08g078220.2.1

Uncharacterized protein (221 aa)

Predicted Functional Partners:

Solyc04g080570.2.1

0.611

Solyc02g062600.2.1

0.611

Solyc03g008010.2.1

0.605

Solyc03g121460.1.1

0.569

Your Current Organism:

Solanum lycopersicum

NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Solyc02g062600.2.1	Solyc03g008010.2.1	Uncharacterized protein	Uncharacterized protein	0.611
Solyc02g062600.2.1	Solyc08g078220.2.1	Uncharacterized protein	Uncharacterized protein	0.611
Solyc03g008010.2.1	Solyc02g062600.2.1	Uncharacterized protein	Uncharacterized protein	0.611
Solyc03g008010.2.1	Solyc04g080570.2.1	Uncharacterized protein	Uncharacterized protein	0.611
Solyc03g008010.2.1	Solyc08g078220.2.1	Uncharacterized protein	Uncharacterized protein	0.605
Solyc03g121460.1.1	Solyc08g078220.2.1	Uncharacterized protein	Uncharacterized protein	0.569
Solyc04g080570.2.1	Solyc03g008010.2.1	Uncharacterized protein	Uncharacterized protein	0.611
Solyc04g080570.2.1	Solyc08g078220.2.1	Uncharacterized protein	Uncharacterized protein	0.611
Solyc08g078220.2.1	Solyc02g062600.2.1	Uncharacterized protein	Uncharacterized protein	0.611
Solyc08g078220.2.1	Solyc03g008010.2.1	Uncharacterized protein	Uncharacterized protein	0.605
Solyc08g078220.2.1	Solyc03g121460.1.1	Uncharacterized protein	Uncharacterized protein	0.569
Solyc08g078220.2.1	Solyc04g080570.2.1	Uncharacterized protein	Uncharacterized protein	0.611

Network

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Experiments

Coexpression

Textmining

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Fusion

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