STRINGSTRING
Solyc08g078800.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc08g078800.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc08g078800.1.1Uncharacterized protein (474 aa)    
Predicted Functional Partners:
Solyc10g044890.1.1
Uncharacterized protein (799 aa)
           
  0.928
Solyc09g098410.1.1
Uncharacterized protein (729 aa)
           
  0.928
LOC543987
Glucan endo-1,3-beta-glucosidase B ; Implicated in the defense of plants against pathogens (360 aa)
           
  0.928
Solyc11g072600.1.1
AP2 transcription factor SlAP2d (481 aa)
           
  0.506
Solyc10g084340.1.1
Uncharacterized protein (462 aa)
           
  0.506
Solyc09g007260.2.1
Uncharacterized protein (455 aa)
           
  0.506
Solyc06g075510.2.1
AP2 transcription factor SlAP2e (474 aa)
           
  0.506
NAM
Goblet; NO APICAL MERISTEM (352 aa)
           
  0.482
AP2b
AP2 transcription factor SlAP2b (504 aa)
           
  0.463
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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