STRINGSTRING
Solyc08g080850.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc08g080850.2.1" - Serine/threonine-protein kinase RIO1 in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc08g080850.2.1Serine/threonine-protein kinase RIO1 (562 aa)    
Predicted Functional Partners:
Solyc03g112820.2.1
U3 small nucleolar ribonucleoprotein protein MPP10 ; Involved in nucleolar processing of pre-18S ribosomal RNA (552 aa)
     
 
  0.903
Solyc12g038460.1.1
Uncharacterized protein (86 aa)
   
  0.815
Solyc10g045260.1.1
Uncharacterized protein (77 aa)
   
  0.815
Solyc10g045250.1.1
Uncharacterized protein (117 aa)
   
  0.815
Solyc07g021130.1.1
Uncharacterized protein (59 aa)
   
  0.815
Solyc06g082620.1.1
Uncharacterized protein (212 aa)
   
  0.815
Solyc03g104820.1.1
Uncharacterized protein (50 aa)
   
  0.815
Solyc02g069950.2.1
KRR-R motif-containing protein 1 ; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly (382 aa)
   
  0.804
BMS1
Ribosome biogenesis protein BMS1 homolog (1231 aa)
     
 
  0.763
Solyc08g007990.2.1
Uncharacterized protein (642 aa)
     
  0.747
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (10%) [HD]