Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
Groups of genes that are frequently observed in each other's genomic neighborhood.
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
annotation not available (152 aa)
Predicted Functional Partners:
ARM repeat superfamily protein (2023 aa)
Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome (474 aa)
Microtubule-associated protein 65-8 (595 aa)
DNA helicase; Minichromosome maintenance (MCM2/3/5) family protein; Belongs to the MCM family (737 aa)
Uncharacterized protein; P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family (1231 aa)
DNA helicase; Minichromosome maintenance (MCM2/3/5) family protein; Belongs to the MCM family (718 aa)
alpha/beta-Hydrolases superfamily protein (302 aa)
Protein of unknown function, DUF593 (832 aa)
ATP binding;protein kinases;protein serine/threonine kinases (529 aa)
Uncharacterized protein; Mad3/BUB1 homology region 1 (588 aa)
Your Current Organism:
NCBI taxonomy Id: 4081 Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato