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Solyc08g081330.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc08g081330.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Solyc08g081330.2.1Uncharacterized protein; P-loop containing nucleoside triphosphate hydrolases superfamily protein (356 aa)    
Predicted Functional Partners:
Solyc04g077790.2.1
Uncharacterized protein; P-loop containing nucleoside triphosphate hydrolases superfamily protein (300 aa)
   
 
0.965
101260378
Unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (660 aa)
       
 
  0.954
101245484
Uncharacterized protein; P-loop containing nucleoside triphosphate hydrolases superfamily protein (267 aa)
   
 
0.953
101257873
Uncharacterized protein; Cytidine/deoxycytidylate deaminase family protein (212 aa)
     
   
  0.892
101256927
Uncharacterized protein; LOCATED IN- chloroplast; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 12 growth stages; CONTAINS InterPro DOMAIN/s- RNA polymerase II-associated protein 1, C-terminal (InterPro-IPR013929), RNA polymerase II-associated protein 1, N-terminal ( /.../ro-IPR013930); Has 276 Blast hits to 220 proteins in 102 species- Archae - 0; Bacteria - 2; Metazoa - 151; Fungi - 65; Plants - 41; Viruses - 0; Other Eukaryotes - 17 (source- NCBI BLink) (1556 aa)
       
 
  0.887
101247688
RNA cyclase family protein (378 aa)
     
   
  0.879
101248675
annotation not available (319 aa)
     
 
  0.878
101264494
Uncharacterized protein; Cytidine/deoxycytidylate deaminase family protein (398 aa)
     
   
  0.861
101258943
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)- acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation (1030 aa)
     
        0.860
101253571
annotation not available (812 aa)
     
        0.859
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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