STRINGSTRING
Solyc08g081340.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc08g081340.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc08g081340.2.1Uncharacterized protein (768 aa)    
Predicted Functional Partners:
Solyc02g078440.2.1
Uncharacterized protein (453 aa)
     
  0.995
Solyc08g079610.2.1
Uncharacterized protein (70 aa)
       
  0.988
Solyc06g008970.2.1
Uncharacterized protein (758 aa)
     
  0.988
Solyc06g071450.2.1
Uncharacterized protein (290 aa)
       
  0.984
Solyc04g071310.2.1
Uncharacterized protein (188 aa)
     
  0.984
Solyc03g119790.2.1
Uncharacterized protein (472 aa)
     
  0.983
Solyc06g064890.2.1
Uncharacterized protein (250 aa)
       
  0.982
Solyc10g005900.2.1
Uncharacterized protein (608 aa)
     
  0.977
Solyc05g053430.2.1
DNA-directed RNA polymerase subunit ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (114 aa)
       
  0.976
Solyc09g010500.2.1
Uncharacterized protein (144 aa)
       
  0.975
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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