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STRINGSTRING
101246077 protein (Solanum lycopersicum) - STRING interaction network
"101246077" - D111/G-patch domain-containing protein in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
101246077D111/G-patch domain-containing protein (357 aa)    
Predicted Functional Partners:
Solyc07g056550.2.1
Uncharacterized protein; CONTAINS InterPro DOMAIN/s- Bystin (InterPro-IPR007955); Has 475 Blast hits to 467 proteins in 210 species- Archae - 0; Bacteria - 9; Metazoa - 155; Fungi - 139; Plants - 55; Viruses - 0; Other Eukaryotes - 117 (source- NCBI BLink) (398 aa)
     
      0.970
101255588
Uncharacterized protein; Transducin/WD40 repeat-like superfamily protein (527 aa)
     
      0.968
101263245
annotation not available (723 aa)
     
 
  0.962
DEAD31
DEA(D/H)-box RNA helicase family protein; Belongs to the DEAD box helicase family (439 aa)
     
 
  0.946
101250131
Uncharacterized protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- nucleolus; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- LisH dimerisation motif (InterPro-IPR006594) /.../0, C-terminal (InterPro-IPR007718); Has 101969 Blast hits to 55488 proteins in 2506 species- Archae - 424; Bacteria - 13843; Metazoa - 37674; Fungi - 9726; Plants - 4941; Viruses - 569; Other Eukaryotes - 34792 (source- NCBI BLink) (411 aa)
     
 
  0.946
RPE1
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1678 aa)
     
 
  0.946
101251881
Unknown protein; Has 1524 Blast hits to 1298 proteins in 225 species- Archae - 9; Bacteria - 84; Metazoa - 474; Fungi - 184; Plants - 98; Viruses - 17; Other Eukaryotes - 658 (source- NCBI BLink) (517 aa)
     
 
  0.942
101246967
Uncharacterized protein; Hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (785 aa)
     
 
  0.942
Solyc10g083600.1.1
Ribosomal RNA processing Brix domain protein (337 aa)
     
 
  0.927
DEAD30
RNA helicase 36; Belongs to the DEAD box helicase family (488 aa)
     
 
  0.927
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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