STRINGSTRING
Solyc08g081580.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc08g081580.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc08g081580.2.1Uncharacterized protein (357 aa)    
Predicted Functional Partners:
Solyc01g005810.2.1
Uncharacterized protein (302 aa)
     
        0.948
Solyc07g008330.2.1
Uncharacterized protein (411 aa)
     
      0.917
RPE1
DNA-directed RNA polymerase V subunit 1; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1678 aa)
     
      0.917
Solyc11g066280.1.1
Uncharacterized protein (335 aa)
     
        0.913
Solyc09g083080.2.1
Uncharacterized protein (552 aa)
     
      0.848
Solyc05g055880.2.1
Uncharacterized protein (513 aa)
     
      0.848
Solyc10g084740.1.1
Uncharacterized protein (440 aa)
     
        0.847
Solyc08g008040.2.1
Uncharacterized protein (203 aa)
     
        0.847
Solyc12g099890.1.1
Uncharacterized protein (812 aa)
     
        0.844
Solyc11g020820.1.1
2’-O-ribose RNA methyltransferase SPB1 homolog ; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits (817 aa)
     
        0.844
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (10%) [HD]