STRINGSTRING
Solyc08g081590.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc08g081590.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc08g081590.1.1Uncharacterized protein (251 aa)    
Predicted Functional Partners:
TOP6B
DNA topoisomerase 6 subunit B ; Component of the DNA topoisomerase VI involved in chromatin organization and progression of endoreduplication cycles. Relaxes both positive and negative superturns and exhibits a strong decatenase activity. The B subunit binds ATP (672 aa)
 
 
 
  0.968
Solyc05g053800.2.1
Uncharacterized protein (1316 aa)
     
  0.946
Solyc01g111870.1.1
Uncharacterized protein (2728 aa)
       
 
  0.936
RAD51
DNA repair protein RAD51 homolog ; Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Underwinds duplex DNA (By similarity) (342 aa)
     
  0.845
Solyc11g073220.1.1
Uncharacterized protein (311 aa)
     
  0.838
Solyc11g072610.1.1
Uncharacterized protein (371 aa)
     
  0.838
Solyc10g079250.1.1
Putative recA protein (395 aa)
     
  0.838
Solyc07g066320.2.1
Uncharacterized protein (419 aa)
     
  0.838
Solyc05g055780.2.1
Uncharacterized protein (418 aa)
     
  0.838
Solyc09g082790.2.1
Uncharacterized protein (334 aa)
     
  0.828
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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