STRINGSTRING
Solyc08g082290.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc08g082290.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc08g082290.2.1Uncharacterized protein (200 aa)    
Predicted Functional Partners:
Solyc07g006520.2.1
Uncharacterized protein (536 aa)
     
 
  0.804
Solyc10g007390.2.1
Uncharacterized protein (475 aa)
     
 
  0.789
Solyc09g065120.2.1
Uncharacterized protein (576 aa)
     
 
  0.789
Solyc02g072130.2.1
Uncharacterized protein (475 aa)
     
 
  0.789
Solyc11g011140.1.1
Uncharacterized protein (188 aa)
     
 
  0.735
Solyc12g062630.1.1
Uncharacterized protein (134 aa)
   
 
  0.735
Solyc01g087500.2.1
DNA topoisomerase 2 ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1478 aa)
   
   
  0.727
Solyc00g042130.1.1
Annotation not available (704 aa)
   
 
  0.704
Solyc12g062620.1.1
Uncharacterized protein (68 aa)
   
 
  0.685
Solyc12g035850.1.1
Ribosomal protein (99 aa)
   
 
  0.685
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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