STRINGSTRING
Solyc09g005460.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc09g005460.1.1" - Uncharacterized protein in Solanum lycopersicum
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc09g005460.1.1Uncharacterized protein (458 aa)    
Predicted Functional Partners:
Solyc10g038080.1.1
Uncharacterized protein (514 aa)
   
 
  0.823
LOC543548
Dehydroquinate dehydratase/shikimate-NADP oxidoreductase (545 aa)
   
 
  0.823
Solyc00g050030.1.1
Annotation not available (702 aa)
 
 
  0.770
CS2
Chorismate synthase 2, chloroplastic ; Catalyzes the last common step of the biosynthesis of aromatic amino acids, produced via the shikimic acid pathway (431 aa)
 
  0.766
CS1
Chorismate synthase 1, chloroplastic ; Catalyzes the last common step of the biosynthesis of aromatic amino acids, produced via the shikimic acid pathway (440 aa)
 
  0.764
LOC543912
Aminodeoxychorismate synthase/glutamine amidotransferase ; Bifunctional enzyme that catalyzes the biosynthesis of 4-amino-4-deoxychorismate (ADC) from chorismate and glutamine. In the first step, a glutamine amidotransferase generates ammonia that is channelled between the binding sites of glutamine and chorismate and used along with chorismate in the second step, catalyzed by aminodeoxychorismate synthase, to produce ADC. Required for the synthesis of 4-aminobenzoate (PABA), an important component in tetrahydrofolate biosynthesis. Does not possess ADC lyase activity (902 aa)
   
 
  0.762
LOC544078
Shikimate kinase, chloroplastic ; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate (300 aa)
     
  0.731
Solyc02g094420.2.1
Uncharacterized protein (250 aa)
     
  0.731
Solyc11g068830.1.1
Uncharacterized protein (477 aa)
       
  0.716
Solyc07g008950.2.1
Uncharacterized protein (812 aa)
         
  0.690
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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