STRINGSTRING
Solyc09g008700.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc09g008700.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc09g008700.1.1Uncharacterized protein (1144 aa)    
Predicted Functional Partners:
UBI3
Ubiquitin-40S ribosomal protein S27a Ubiquitin 40S ribosomal protein S27a; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin tha [...] (156 aa)
       
  0.808
Solyc11g011900.1.1
Uncharacterized protein (284 aa)
     
  0.715
Solyc11g005670.1.1
Ubiquitin (534 aa)
     
  0.715
Solyc11g005650.1.1
Uncharacterized protein (113 aa)
     
  0.715
Solyc11g005640.1.1
Uncharacterized protein (222 aa)
     
  0.715
Solyc10g006480.1.1
Ubiquitin (457 aa)
     
  0.715
Solyc10g005560.2.1
Ubiquitin (154 aa)
     
  0.715
Solyc07g064130.1.1
Ubiquitin (457 aa)
     
  0.715
Solyc07g052500.1.1
Uncharacterized protein (258 aa)
     
  0.715
Solyc03g078630.2.1
Uncharacterized protein (209 aa)
     
  0.715
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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