STRINGSTRING
Solyc09g008850.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc09g008850.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc09g008850.2.1Uncharacterized protein (532 aa)    
Predicted Functional Partners:
Solyc10g005880.2.1
Uridine kinase (422 aa)
   
 
  0.801
Solyc07g065890.2.1
Uridine kinase (446 aa)
   
 
  0.801
Solyc06g065580.2.1
Uridine kinase (483 aa)
   
 
  0.801
Solyc02g067880.1.1
Uridine kinase (445 aa)
   
 
  0.801
Solyc11g068830.1.1
Uncharacterized protein (477 aa)
   
 
  0.794
Solyc07g018360.2.1
Elongation factor Ts ; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome (1048 aa)
   
   
  0.722
Solyc08g081150.2.1
Uncharacterized protein (536 aa)
     
 
  0.708
Solyc00g042130.1.1
Annotation not available (704 aa)
   
 
  0.679
Solyc12g062630.1.1
Uncharacterized protein (134 aa)
   
   
  0.658
ER49
Elongation factor Ts, mitochondrial ; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome (391 aa)
   
   
  0.651
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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