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STRINGSTRING
Solyc09g009900.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc09g009900.2.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc09g009900.2.1annotation not available (157 aa)    
Predicted Functional Partners:
Solyc10g081210.1.1
annotation not available (89 aa)
         
 
0.800
RPA32b
annotation not available (280 aa)
     
 
  0.633
RPA32a
annotation not available (272 aa)
     
 
  0.633
101250913
Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses (899 aa)
           
  0.603
101259439
Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses (636 aa)
           
  0.603
101255870
Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses (614 aa)
     
   
  0.573
101267918
Uncharacterized protein; Replication factor C 2 (331 aa)
           
  0.569
Solyc02g086580.2.1
Uncharacterized protein; ATP binding;ATP-dependent helicases;DNA helicases (1204 aa)
           
  0.517
101257334
annotation not available (492 aa)
           
  0.412
101257314
Zinc knuckle (CCHC-type) family protein (261 aa)
           
  0.412
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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