STRINGSTRING
Solyc09g015290.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc09g015290.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc09g015290.1.1Uncharacterized protein (80 aa)    
Predicted Functional Partners:
Solyc09g015280.1.1
Uncharacterized protein (149 aa)
   
          0.526
Solyc09g018800.1.1
Uncharacterized protein (95 aa)
   
          0.522
Solyc05g016130.1.1
Uncharacterized protein (84 aa)
   
          0.520
Solyc00g245200.1.1
Annotation not available (61 aa)
   
          0.517
psaA
Photosystem I P700 apoprotein A1; PsaA and PsaB bind P700, the primary electron donor of photosystem I (PSI), as well as the electron acceptors A0, A1 and FX. PSI is a plastocyanin-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, FA and FB in turn. Oxidized P700 is reduced on the lumenal side of the thylakoid membrane by plastocyanin (135 aa)
   
          0.515
Solyc01g018090.1.1
Uncharacterized protein (99 aa)
   
          0.511
Solyc12g035740.1.1
Uncharacterized protein (148 aa)
   
          0.505
psbD
Photosystem II protein D2; Photosystem II (PSII) is a light-driven water- plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1/D2 (PsbA/PsbA) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors. D2 is needed for assembly of a stable PSII complex (146 aa)
   
          0.501
Solyc01g017310.1.1
Uncharacterized protein (74 aa)
   
          0.499
Solyc01g017320.1.1
Uncharacterized protein (68 aa)
   
          0.498
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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