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STRINGSTRING
Solyc09g018690.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc09g018690.2.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc09g018690.2.1annotation not available (507 aa)    
Predicted Functional Partners:
MLH1
Uncharacterized protein; MLH1 (728 aa)
   
 
  0.890
101267092
Uncharacterized protein; Domain of unknown function (DUF1767) (411 aa)
     
 
  0.884
101249845
Uncharacterized protein; Restriction endonuclease, type II-like superfamily protein (953 aa)
     
 
  0.881
101256634
Uncharacterized protein; Ataxia telangiectasia-mutated and RAD3-related (2728 aa)
     
 
  0.871
101264663
DNA repair and meiosis protein (Mre11); Belongs to the MRE11/RAD32 family (731 aa)
   
 
  0.848
101260670
Uncharacterized protein; KU70 homolog (624 aa)
     
 
  0.827
101245831
5’-3’ exonuclease family protein (544 aa)
   
 
  0.804
Solyc02g071530.1.1
5’-3’ exonuclease family protein (742 aa)
   
 
  0.804
101245268
Uncharacterized protein; Homolog of X-ray repair cross complementing 3 (XRCC3) (285 aa)
     
 
  0.802
Solyc01g068350.2.1
annotation not available (214 aa)
     
 
  0.796
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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