STRINGSTRING
Solyc09g018850.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc09g018850.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc09g018850.2.1Uncharacterized protein (476 aa)    
Predicted Functional Partners:
Solyc03g033530.2.1
Uncharacterized protein (591 aa)
       
  0.940
Solyc04g016530.2.1
DNA-(apurinic or apyrimidinic site) lyase (539 aa)
       
  0.937
Solyc03g111600.2.1
DNA-(apurinic or apyrimidinic site) lyase (377 aa)
       
  0.937
pcna
Proliferating cell nuclear antigen ; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (264 aa)
     
 
  0.854
Solyc02g093300.2.1
DNA polymerase alpha catalytic subunit (1561 aa)
     
   
  0.605
Solyc01g087500.2.1
DNA topoisomerase 2 ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1478 aa)
   
 
  0.596
Solyc03g093260.2.1
Uncharacterized protein (552 aa)
   
   
  0.569
Solyc03g093250.1.1
Uncharacterized protein (647 aa)
   
   
  0.569
Solyc06g073780.2.1
SMC3 (1229 aa)
   
   
  0.568
MSH2
Mismatch repair protein ; Component of the post-replicative DNA mismatch repair system (MMR) (943 aa)
     
 
  0.558
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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