STRINGSTRING
Solyc09g047870.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc09g047870.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc09g047870.2.1Uncharacterized protein (287 aa)    
Predicted Functional Partners:
Solyc02g079100.2.1
Uncharacterized protein (385 aa)
         
  0.602
Solyc06g050350.2.1
Uncharacterized protein (519 aa)
           
  0.489
Solyc05g015930.2.1
Uncharacterized protein (1544 aa)
           
  0.489
Solyc05g015920.2.1
Uncharacterized protein (1561 aa)
           
  0.489
Solyc01g104980.2.1
Uncharacterized protein (475 aa)
           
  0.489
Solyc02g068410.1.1
Uncharacterized protein (508 aa)
           
  0.485
Solyc01g087500.2.1
DNA topoisomerase 2 ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1478 aa)
         
  0.482
Solyc02g076720.2.1
Uncharacterized protein (1459 aa)
              0.453
Solyc01g107270.2.1
Uncharacterized protein (1333 aa)
              0.453
Solyc12g056940.1.1
Uncharacterized protein (2210 aa)
              0.451
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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