STRINGSTRING
Solyc09g057950.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc09g057950.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc09g057950.2.1Uncharacterized protein (609 aa)    
Predicted Functional Partners:
Solyc07g008950.2.1
Uncharacterized protein (812 aa)
   
  0.987
Solyc09g090840.2.1
Uncharacterized protein (576 aa)
   
  0.985
GATA
Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial ; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho- Glu-tRNA(Gln) (529 aa)
   
  0.965
Solyc07g063140.1.1
Uncharacterized protein (140 aa)
     
 
    0.901
Solyc12g008570.1.1
Uncharacterized protein (649 aa)
   
  0.852
Solyc02g081000.1.1
Uncharacterized protein (205 aa)
   
  0.849
Solyc02g080990.1.1
Uncharacterized protein (540 aa)
   
  0.849
Solyc02g080980.2.1
Uncharacterized protein (425 aa)
   
  0.849
Solyc02g069140.1.1
Uncharacterized protein (1041 aa)
   
  0.849
LARS
leucine--tRNA ligase, cytoplasmic (1079 aa)
   
  0.849
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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