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STRINGSTRING
Solyc09g059810.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc09g059810.1.1" - annotation not available in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc09g059810.1.1annotation not available (155 aa)    
Predicted Functional Partners:
RPE1
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1678 aa)
     
 
  0.807
101253609
annotation not available (583 aa)
     
 
  0.751
101246431
annotation not available (568 aa)
     
 
  0.751
101256074
Uncharacterized protein; Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (580 aa)
     
 
  0.751
101252721
annotation not available (571 aa)
     
 
  0.751
Solyc12g099030.1.1
Uncharacterized protein; Ubiquitin (190 aa)
       
 
  0.686
101248858
Uncharacterized protein; Ubiquitin (156 aa)
       
 
  0.686
UBI3
Ubiquitin-40S ribosomal protein S27a; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked- Lys-48-linked is involve [...] (156 aa)
       
 
  0.686
UBC1
Ubiquitin conjugating enzyme ; Belongs to the ubiquitin-conjugating enzyme family (194 aa)
     
 
  0.644
101246856
Ubiquitin protein ligase 6 (1030 aa)
     
   
  0.623
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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