STRINGSTRING
LOC544217 protein (Solanum lycopersicum) - STRING interaction network
"LOC544217" - MRNA binding protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC544217MRNA binding protein (407 aa)    
Predicted Functional Partners:
101253094
Uncharacterized protein; Chloroplast RNA binding (379 aa)
   
 
0.985
101249417
annotation not available (360 aa)
     
   
  0.964
101268280
Inorganic carbon transport protein-related (196 aa)
     
   
  0.933
101254882
Uncharacterized protein; ATP synthase delta-subunit gene (250 aa)
     
   
  0.926
101249229
Uncharacterized protein; Cyclophilin 38 (451 aa)
   
        0.916
101255322
Phosphoribulokinase (400 aa)
     
   
  0.915
101260575
Unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast, chloroplast inner membrane; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 14 growth stages; Has 35333 Blast hits to 3 /.../roteins in 2444 species- Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source- NCBI BLink) (276 aa)
   
        0.911
101259227
PsbP-like protein 1 (246 aa)
   
        0.897
101249276
Uncharacterized protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast thylakoid membrane, chloroplast; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; BEST Arabidopsis thaliana protein matc /.../photosystem I P subunit (TAIR-AT2G46820.2); Has 291 Blast hits to 291 proteins in 50 species- Archae - 0; Bacteria - 90; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 1 (source- NCBI BLink) (147 aa)
   
        0.888
101243905
Thioredoxin superfamily protein (213 aa)
     
        0.888
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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