STRINGSTRING
LOC544217 protein (Solanum lycopersicum) - STRING interaction network
"LOC544217" - MRNA binding protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC544217MRNA binding protein (407 aa)    
Predicted Functional Partners:
Solyc06g073260.2.1
Uncharacterized protein (379 aa)
   
 
0.824
Solyc01g098640.2.1
Uncharacterized protein (289 aa)
   
        0.643
Solyc02g086910.2.1
Uncharacterized protein (451 aa)
   
        0.636
Solyc10g054420.1.1
Uncharacterized protein (227 aa)
   
        0.589
Solyc09g011810.2.1
Uncharacterized protein (403 aa)
     
        0.579
Solyc07g054290.1.1
Uncharacterized protein (197 aa)
   
        0.522
Solyc09g064500.2.1
Photosystem II reaction center Psb28 protein (180 aa)
   
        0.516
Solyc01g096240.2.1
Uncharacterized protein (276 aa)
   
        0.508
Solyc03g114930.2.1
Uncharacterized protein (246 aa)
   
        0.508
Solyc04g010080.2.1
Uncharacterized protein (729 aa)
           
  0.497
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (7%) [HD]