STRINGSTRING
Solyc09g083080.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc09g083080.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc09g083080.2.1Uncharacterized protein (552 aa)    
Predicted Functional Partners:
Solyc03g025270.2.1
Uncharacterized protein (314 aa)
   
  0.999
Solyc02g093460.2.1
Uncharacterized protein (539 aa)
   
 
  0.997
Solyc02g081810.2.1
Uncharacterized protein (597 aa)
   
 
  0.997
Solyc01g100570.2.1
Uncharacterized protein (553 aa)
   
0.997
Solyc03g120080.2.1
Uncharacterized protein (666 aa)
     
  0.997
POLR1B
Probable DNA-directed RNA polymerase I subunit RPA2; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1096 aa)
     
  0.997
Solyc03g097160.2.1
Uncharacterized protein (871 aa)
     
  0.996
Solyc03g116380.2.1
Uncharacterized protein (626 aa)
     
  0.996
Solyc02g030080.2.1
Uncharacterized protein (602 aa)
     
  0.996
Solyc10g039190.1.1
Uncharacterized protein (950 aa)
     
  0.996
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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