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Solyc09g083340.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc09g083340.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc09g083340.1.1Uncharacterized protein; DNA-directed RNA polymerase II-related (172 aa)    
Predicted Functional Partners:
Solyc10g007650.2.1
annotation not available (52 aa)
     
 
  0.965
101259186
annotation not available (144 aa)
     
 
  0.964
101251196
annotation not available (71 aa)
     
 
  0.955
101264221
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (114 aa)
     
 
  0.954
101244156
Uncharacterized protein; DNA-directed RNA polymerase, RBP11-like (116 aa)
     
 
  0.952
101248675
annotation not available (319 aa)
     
 
  0.952
101248963
Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex (116 aa)
     
 
  0.930
RPE1
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1678 aa)
     
 
  0.908
Solyc01g028930.2.1
annotation not available (203 aa)
     
 
  0.908
Solyc03g031690.2.1
annotation not available (109 aa)
     
 
  0.907
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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