STRINGSTRING
LOC543596 protein (Solanum lycopersicum) - STRING interaction network
"LOC543596" - Cryptochrome 2 in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC543596Cryptochrome 2 (635 aa)    
Predicted Functional Partners:
COP1
COP1 homolog (677 aa)
       
  0.950
phyA
Phytochrome ; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light- the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region (1123 aa)
     
 
  0.884
Solyc10g011690.2.1
Uncharacterized protein (1019 aa)
       
  0.880
Solyc08g081990.2.1
Uncharacterized protein (1052 aa)
       
  0.880
Solyc12g095900.1.1
Uncharacterized protein (722 aa)
         
  0.857
Solyc11g070100.1.1
Uncharacterized protein (603 aa)
         
  0.857
Solyc08g065870.2.1
Uncharacterized protein (644 aa)
         
  0.857
Solyc06g062480.2.1
Uncharacterized protein (602 aa)
         
  0.857
Solyc11g011980.1.1
Uncharacterized protein (672 aa)
       
  0.847
Solyc10g078380.1.1
Uncharacterized protein (261 aa)
       
  0.838
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (19%) [HD]