STRINGSTRING
MSH1 protein (Solanum lycopersicum) - STRING interaction network
"MSH1" - DNA mismatch repair protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MSH1DNA mismatch repair protein (1137 aa)    
Predicted Functional Partners:
MSH2
Mismatch repair protein ; Component of the post-replicative DNA mismatch repair system (MMR) (943 aa)
     
0.989
pcna
Proliferating cell nuclear antigen ; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (264 aa)
     
  0.977
Solyc09g074990.2.1
Uncharacterized protein (142 aa)
   
  0.966
Solyc09g074980.2.1
Uncharacterized protein (796 aa)
   
  0.966
MLH1
MLH1 (728 aa)
   
  0.965
Solyc02g082660.2.1
Uncharacterized protein (1211 aa)
   
  0.946
Solyc07g042790.1.1
Uncharacterized protein (1452 aa)
     
  0.898
Solyc06g034070.1.1
Uncharacterized protein (1557 aa)
     
  0.898
Solyc11g067140.1.1
Uncharacterized protein (932 aa)
     
 
  0.891
Solyc11g067130.1.1
Uncharacterized protein (660 aa)
     
 
  0.891
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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