STRINGSTRING
RBR1 protein (Solanum lycopersicum) - STRING interaction network
"RBR1" - Retinoblastoma-related protein 1 in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBR1Retinoblastoma-related protein 1 (1018 aa)    
Predicted Functional Partners:
Solyc09g010670.2.1
Uncharacterized protein (195 aa)
     
  0.997
DP1
Transcription factor-like protein DPB (354 aa)
     
  0.997
Solyc04g081350.2.1
Uncharacterized protein (397 aa)
     
  0.985
Solyc11g068800.1.1
Uncharacterized protein (449 aa)
     
  0.984
Solyc06g074010.2.1
Uncharacterized protein (847 aa)
     
  0.984
Solyc01g007760.2.1
Uncharacterized protein (479 aa)
     
  0.984
MSI1
WD-40 repeat-containing protein MSI1 (424 aa)
     
  0.972
Solyc11g020290.1.1
Uncharacterized protein (139 aa)
     
  0.971
Solyc07g039330.2.1
Uncharacterized protein (377 aa)
     
  0.971
Solyc07g039320.2.1
Uncharacterized protein (152 aa)
     
  0.971
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (15%) [HD]