STRINGSTRING
Solyc09g091440.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc09g091440.2.1" - Histone deacetylase in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc09g091440.2.1Histone deacetylase (498 aa)    
Predicted Functional Partners:
Solyc02g089970.2.1
Uncharacterized protein (1509 aa)
   
  0.979
Solyc11g020290.1.1
Uncharacterized protein (139 aa)
     
  0.968
Solyc07g039330.2.1
Uncharacterized protein (377 aa)
     
  0.968
Solyc07g039320.2.1
Uncharacterized protein (152 aa)
     
  0.968
Solyc03g121580.2.1
Uncharacterized protein (460 aa)
     
  0.968
Solyc01g111590.2.1
Uncharacterized protein (403 aa)
     
  0.968
MSI1
WD-40 repeat-containing protein MSI1 (424 aa)
     
  0.968
RBR1
Retinoblastoma-related protein 1 (1018 aa)
     
  0.966
Solyc04g028560.2.1
Uncharacterized protein (777 aa)
       
  0.964
Solyc03g111590.2.1
Uncharacterized protein (1252 aa)
       
  0.964
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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