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STRINGSTRING
543608 protein (Solanum lycopersicum) - STRING interaction network
"543608" - Beta-galactosidase in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
543608Beta-galactosidase (892 aa)    
Predicted Functional Partners:
101260937
Uncharacterized protein; methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS); Belongs to the class-I aminoacyl-tRNA synthetase family (619 aa)
       
      0.741
Solyc04g005030.2.1
Phosphoglucosamine mutase family protein (596 aa)
         
  0.696
101260591
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1677 aa)
           
  0.695
101257715
Calcium load-activated calcium channel; Calcium-selective channel required to prevent calcium stores from overfilling (194 aa)
           
  0.695
101260232
Uncharacterized protein; SIN3 associated polypeptide P18 (156 aa)
           
  0.695
101256314
Uncharacterized protein; Nudix hydrolase homolog 14 (307 aa)
           
  0.692
101244612
annotation not available (883 aa)
           
  0.665
Solyc03g111640.2.1
annotation not available (685 aa)
           
  0.606
Solyc03g111630.2.1
annotation not available (695 aa)
           
  0.606
101245755
annotation not available (133 aa)
           
  0.599
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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