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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc09g098260.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc09g098260.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc09g098260.1.1annotation not available (588 aa)    
Predicted Functional Partners:
Solyc01g096950.2.1
Uncharacterized protein; Transducin/WD40 repeat-like superfamily protein (523 aa)
     
 
  0.933
Solyc11g065370.1.1
Uncharacterized protein; TRAUCO (446 aa)
     
 
  0.927
Solyc06g010200.2.1
annotation not available (1613 aa)
     
 
  0.927
101249316
Uncharacterized protein; Transducin/WD40 repeat-like superfamily protein (314 aa)
     
 
  0.896
Solyc12g035360.1.1
Uncharacterized protein; Transducin/WD40 repeat-like superfamily protein (333 aa)
       
 
  0.837
101258611
Uncharacterized protein; Transducin/WD40 repeat-like superfamily protein (332 aa)
       
 
  0.837
Solyc03g063220.1.1
SNF2 domain-containing protein / helicase domain-containing protein (1608 aa)
     
 
  0.750
Solyc03g063210.2.1
annotation not available (569 aa)
     
 
  0.750
101250941
Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII) (1642 aa)
   
 
  0.743
101247139
annotation not available (216 aa)
     
 
  0.736
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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