101256813 protein (Solanum lycopersicum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:			Neighborhood	Gene Fusion	Cooccurence	Coexpression	Experiments	Databases	Textmining	[Homology]	Score
	101256813	annotation not available (419 aa)
Predicted Functional Partners:
	101253805	annotation not available (482 aa)									0.993
	101254111	Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family (401 aa)									0.992
	101264854	annotation not available (683 aa)									0.991
	Solyc04g011510.2.1	Uncharacterized protein; Triosephosphate isomerase (259 aa)									0.978
	101262732	Uncharacterized protein; Aldehyde dehydrogenase 11A3; Belongs to the aldehyde dehydrogenase family (496 aa)									0.965
	101250846	annotation not available (312 aa)									0.961
	101246286	annotation not available (326 aa)									0.961
	101253902	annotation not available (257 aa)									0.945
	101262466	annotation not available (358 aa)									0.944
	101266063	Fructose-bisphosphate aldolase (358 aa)									0.944

Your Current Organism:

Solanum lycopersicum

NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
101246286	101253805	Solyc01g111120.2.1	Solyc07g066610.2.1	annotation not available	annotation not available	0.994
101246286	101254111	Solyc01g111120.2.1	Solyc07g066600.2.1	annotation not available	Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family	0.997
101246286	101256813	Solyc01g111120.2.1	Solyc10g005510.2.1	annotation not available	annotation not available	0.961
101246286	101262466	Solyc01g111120.2.1	Solyc10g083570.1.1	annotation not available	annotation not available	0.829
101246286	101262732	Solyc01g111120.2.1	Solyc07g005390.2.1	annotation not available	Uncharacterized protein; Aldehyde dehydrogenase 11A3; Belongs to the aldehyde dehydrogenase family	0.957
101246286	101264854	Solyc01g111120.2.1	Solyc09g008130.2.1	annotation not available	annotation not available	0.990
101246286	101266063	Solyc01g111120.2.1	Solyc09g009260.2.1	annotation not available	Fructose-bisphosphate aldolase	0.829
101250846	101253805	Solyc10g054870.1.1	Solyc07g066610.2.1	annotation not available	annotation not available	0.994
101250846	101254111	Solyc10g054870.1.1	Solyc07g066600.2.1	annotation not available	Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family	0.997
101250846	101256813	Solyc10g054870.1.1	Solyc10g005510.2.1	annotation not available	annotation not available	0.961
101250846	101262466	Solyc10g054870.1.1	Solyc10g083570.1.1	annotation not available	annotation not available	0.829
101250846	101262732	Solyc10g054870.1.1	Solyc07g005390.2.1	annotation not available	Uncharacterized protein; Aldehyde dehydrogenase 11A3; Belongs to the aldehyde dehydrogenase family	0.957
101250846	101264854	Solyc10g054870.1.1	Solyc09g008130.2.1	annotation not available	annotation not available	0.990
101250846	101266063	Solyc10g054870.1.1	Solyc09g009260.2.1	annotation not available	Fructose-bisphosphate aldolase	0.829
101253805	101246286	Solyc07g066610.2.1	Solyc01g111120.2.1	annotation not available	annotation not available	0.994
101253805	101250846	Solyc07g066610.2.1	Solyc10g054870.1.1	annotation not available	annotation not available	0.994
101253805	101253902	Solyc07g066610.2.1	Solyc06g005490.2.1	annotation not available	annotation not available	0.993
101253805	101254111	Solyc07g066610.2.1	Solyc07g066600.2.1	annotation not available	Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family	0.802
101253805	101256813	Solyc07g066610.2.1	Solyc10g005510.2.1	annotation not available	annotation not available	0.993
101253805	101262466	Solyc07g066610.2.1	Solyc10g083570.1.1	annotation not available	annotation not available	0.952

page 1 of 5

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2018

Credits

Access

Info

About