• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc10g005980.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc10g005980.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc10g005980.1.1annotation not available (572 aa)    
Predicted Functional Partners:
Solyc07g065520.2.1
annotation not available (752 aa)
         
 
0.800
Solyc07g065510.2.1
annotation not available (728 aa)
         
 
0.800
cdc5
CDC5-like protein (987 aa)
     
 
  0.629
TNPO1
Uncharacterized protein; Transportin 1 (890 aa)
     
 
  0.616
101263464
annotation not available (521 aa)
     
 
  0.606
Solyc07g007210.2.1
annotation not available (925 aa)
     
 
  0.597
101265974
Eukaryotic translation initiation factor 3 subunit E; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation (438 aa)
     
 
  0.592
101245685
Uncharacterized protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- mRNA splicing factor, Cwf21 (InterPro-IPR013170); Has 30201 Blast hits to 17322 proteins in 780 sp /.../ Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (639 aa)
     
 
  0.585
Solyc11g006940.1.1
Uncharacterized protein; Pentatricopeptide repeat (PPR-like) superfamily protein (608 aa)
     
 
  0.580
101248760
U2 small nuclear ribonucleoprotein A (286 aa)
       
 
  0.570
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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