STRINGSTRING
Solyc10g007010.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc10g007010.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc10g007010.1.1Uncharacterized protein (79 aa)    
Predicted Functional Partners:
Solyc04g008770.2.1
Uncharacterized protein (153 aa)
       
  0.904
Solyc07g063160.2.1
Uncharacterized protein (135 aa)
         
 
0.800
Solyc11g042990.1.1
Uncharacterized protein (934 aa)
       
      0.625
Solyc04g076890.2.1
Ubiquitin-fold modifier-conjugating enzyme 1 ; E2-like enzyme which forms an intermediate with UFM1 via a thioester linkage (174 aa)
       
      0.625
Solyc00g042140.1.1
Annotation not available (399 aa)
     
 
  0.554
atpB
ATP synthase subunit beta, chloroplastic ; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits (609 aa)
     
 
  0.527
Solyc12g044380.1.1
Uncharacterized protein (94 aa)
     
   
  0.521
Solyc03g120820.2.1
Uncharacterized protein (99 aa)
     
   
  0.521
Solyc09g005640.2.1
Uncharacterized protein (325 aa)
     
 
  0.510
Solyc12g062530.1.1
Uncharacterized protein (99 aa)
     
 
  0.509
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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