101261461 protein (Solanum lycopersicum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:			Neighborhood	Gene Fusion	Cooccurence	Coexpression	Experiments	Databases	Textmining	[Homology]	Score
	101261461	annotation not available (481 aa)
Predicted Functional Partners:
	101257261	Major facilitator superfamily protein (573 aa)									0.567
	101245882	annotation not available (377 aa)									0.495
	101267022	Uncharacterized protein; Magnesium transporter 3 (415 aa)									0.495
	101261964	Uncharacterized protein; Magnesium transporter 4 (498 aa)									0.495
	101262221	annotation not available (224 aa)									0.482
	101244761	annotation not available (233 aa)									0.482
	Solyc10g084980.1.1	annotation not available (148 aa)									0.474
	101244986	annotation not available (141 aa)									0.474
	101248609	annotation not available (133 aa)									0.474
	101262638	annotation not available (155 aa)									0.474

Your Current Organism:

Solanum lycopersicum

NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
101244761	101261461	Solyc03g110960.2.1	Solyc10g007280.2.1	annotation not available	annotation not available	0.482
101244986	101245882	Solyc09g014870.1.1	Solyc09g065920.2.1	annotation not available	annotation not available	0.597
101244986	101257261	Solyc09g014870.1.1	Solyc05g009500.2.1	annotation not available	Major facilitator superfamily protein	0.471
101244986	101261461	Solyc09g014870.1.1	Solyc10g007280.2.1	annotation not available	annotation not available	0.474
101244986	101261964	Solyc09g014870.1.1	Solyc01g106900.2.1	annotation not available	Uncharacterized protein; Magnesium transporter 4	0.597
101244986	101267022	Solyc09g014870.1.1	Solyc05g012220.2.1	annotation not available	Uncharacterized protein; Magnesium transporter 3	0.593
101245882	101244986	Solyc09g065920.2.1	Solyc09g014870.1.1	annotation not available	annotation not available	0.597
101245882	101248609	Solyc09g065920.2.1	Solyc09g011700.1.1	annotation not available	annotation not available	0.597
101245882	101257261	Solyc09g065920.2.1	Solyc05g009500.2.1	annotation not available	Major facilitator superfamily protein	0.489
101245882	101261461	Solyc09g065920.2.1	Solyc10g007280.2.1	annotation not available	annotation not available	0.495
101245882	101262638	Solyc09g065920.2.1	Solyc08g006250.1.1	annotation not available	annotation not available	0.597
101245882	Solyc10g084980.1.1	Solyc09g065920.2.1	Solyc10g084980.1.1	annotation not available	annotation not available	0.597
101248609	101245882	Solyc09g011700.1.1	Solyc09g065920.2.1	annotation not available	annotation not available	0.597
101248609	101257261	Solyc09g011700.1.1	Solyc05g009500.2.1	annotation not available	Major facilitator superfamily protein	0.471
101248609	101261461	Solyc09g011700.1.1	Solyc10g007280.2.1	annotation not available	annotation not available	0.474
101248609	101261964	Solyc09g011700.1.1	Solyc01g106900.2.1	annotation not available	Uncharacterized protein; Magnesium transporter 4	0.597
101248609	101267022	Solyc09g011700.1.1	Solyc05g012220.2.1	annotation not available	Uncharacterized protein; Magnesium transporter 3	0.596
101257261	101244986	Solyc05g009500.2.1	Solyc09g014870.1.1	Major facilitator superfamily protein	annotation not available	0.471
101257261	101245882	Solyc05g009500.2.1	Solyc09g065920.2.1	Major facilitator superfamily protein	annotation not available	0.489
101257261	101248609	Solyc05g009500.2.1	Solyc09g011700.1.1	Major facilitator superfamily protein	annotation not available	0.471

page 1 of 3

Network

Neighborhood

Textmining

Cooccurrence

Experiments

Fusion

Databases

Coexpression

© STRING Consortium 2018

Credits

Access

Info

About