STRINGSTRING
Solyc10g008130.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc10g008130.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc10g008130.2.1Uncharacterized protein (247 aa)    
Predicted Functional Partners:
Solyc02g083470.2.1
Uncharacterized protein (768 aa)
     
 
  0.975
Solyc10g085580.1.1
Uncharacterized protein (701 aa)
     
      0.968
Solyc01g090470.2.1
Uncharacterized protein (389 aa)
     
      0.954
Solyc02g069950.2.1
KRR-R motif-containing protein 1 ; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly (382 aa)
     
      0.934
Solyc04g076560.2.1
Uncharacterized protein (313 aa)
     
 
  0.924
Solyc01g005810.2.1
Uncharacterized protein (302 aa)
     
        0.889
Solyc09g005760.2.1
Uncharacterized protein (893 aa)
     
   
  0.848
Solyc07g064350.1.1
Uncharacterized protein (618 aa)
     
        0.840
Solyc11g065980.1.1
Uncharacterized protein (271 aa)
     
        0.832
Solyc11g065960.1.1
Uncharacterized protein (168 aa)
     
        0.832
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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