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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc10g008200.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc10g008200.2.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc10g008200.2.1annotation not available (419 aa)    
Predicted Functional Partners:
101245475
annotation not available (441 aa)
     
 
  0.953
101257377
annotation not available (441 aa)
     
 
  0.953
Solyc03g044120.1.1
annotation not available (476 aa)
         
  0.913
101263391
annotation not available (313 aa)
   
 
  0.906
101260072
annotation not available (452 aa)
     
  0.857
101261642
Aspartate aminotransferase 5 (462 aa)
     
  0.857
101244094
Aspartate aminotransferase 1 (425 aa)
     
  0.857
HGO
Uncharacterized protein; Homogentisate 1,2-dioxygenase (463 aa)
     
   
  0.854
101260925
annotation not available (414 aa)
       
  0.828
Solyc12g096240.1.1
annotation not available (424 aa)
   
   
 
0.804
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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