STRINGSTRING
Solyc10g008800.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc10g008800.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc10g008800.2.1Uncharacterized protein (556 aa)    
Predicted Functional Partners:
Solyc04g072670.2.1
Uncharacterized protein (760 aa)
     
 
  0.752
Solyc02g068750.1.1
Uncharacterized protein (346 aa)
       
      0.625
Solyc02g078360.2.1
Uncharacterized protein (296 aa)
     
      0.464
GRX1
SlGRX1 protein (292 aa)
       
      0.463
Solyc06g067960.2.1
Uncharacterized protein (170 aa)
       
      0.463
Solyc02g082200.2.1
Uncharacterized protein (176 aa)
       
      0.463
Solyc05g050940.2.1
Uncharacterized protein (453 aa)
       
      0.446
Solyc03g111870.2.1
Uncharacterized protein (437 aa)
           
  0.414
RFP1
E3 ubiquitin-protein ligase RGLG2-like (492 aa)
           
  0.414
Solyc12g038160.1.1
Uncharacterized protein (690 aa)
           
  0.402
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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