STRINGSTRING
Solyc10g009220.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc10g009220.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc10g009220.2.1Uncharacterized protein (484 aa)    
Predicted Functional Partners:
LHP1
Chromo domain protein LHP1 ; Structural component of heterochromatin involved in gene repression. Recognizes and binds histone H3 tails methylated at ’Lys-9’, leading to epigenetic repression (399 aa)
     
 
  0.725
Solyc11g005110.1.1
Uncharacterized protein (523 aa)
     
    0.658
Solyc09g008470.2.1
Uncharacterized protein (345 aa)
       
    0.640
Solyc09g075090.1.1
Uncharacterized protein (305 aa)
     
  0.627
Solyc06g009060.2.1
Uncharacterized protein (262 aa)
     
  0.627
Solyc03g082380.2.1
Uncharacterized protein (280 aa)
     
  0.627
Solyc01g099810.2.1
Uncharacterized protein (264 aa)
     
  0.627
Solyc10g074870.1.1
Uncharacterized protein (282 aa)
       
  0.619
Solyc09g031930.2.1
Uncharacterized protein (282 aa)
       
  0.619
Solyc07g066070.2.1
Uncharacterized protein (295 aa)
       
  0.619
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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