STRINGSTRING
Solyc10g011940.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc10g011940.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc10g011940.1.1Uncharacterized protein (1172 aa)    
Predicted Functional Partners:
Solyc12g035870.1.1
Uncharacterized protein (398 aa)
     
  0.976
Solyc02g087710.2.1
Uncharacterized protein (639 aa)
     
  0.958
Solyc01g087500.2.1
DNA topoisomerase 2 ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1478 aa)
     
  0.911
Solyc02g087700.2.1
Uncharacterized protein (72 aa)
     
 
  0.887
Solyc02g087680.1.1
Uncharacterized protein (158 aa)
     
 
  0.887
Solyc02g078580.1.1
Uncharacterized protein (645 aa)
     
 
  0.884
Solyc11g067020.1.1
Histone deacetylase (430 aa)
     
  0.875
Solyc09g091440.2.1
Histone deacetylase (498 aa)
     
  0.875
Solyc06g071680.2.1
Histone deacetylase (471 aa)
     
  0.875
Solyc03g112410.1.1
Histone deacetylase (449 aa)
     
  0.875
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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